genewise output
Score 232.12 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000652_2.0   13 LAMGMWSLGLGAVGAAIAGLILANTDFLLTKSAPATVDYLANADLKTID 
                     LAMG+ +  +  VG  +   +   T++ LT    AT+ +L   +LKT+  
                     LAMGLLTSAVATVGGIVTSFMNLFTNIFLTSPLKATLTHLEETELKTLS 
OMLM01009762.1:47859 cgagccaagggagggagaataattaaattatccagacactggagcaatt 
                     tctgttcgctcctggttcgttattcatttccctacctcataacatactc 
                     tggtcccccgctgtccctttgcacttccgaggggttcatgggtgcagga 


SPP00000652_2.0   62 G                          ERSLKAKALWEKSGAVIMAVRR 
                     G                           +++KAK+LWEKSGAV+MAVRR 
                     G          D:D[gat]        TKTVKAKSLWEKSGAVVMAVRR 
OMLM01009762.1:48006 gGGTAAATC  Intron 1   CAGATaaagagatttgatggggaggcc 
                     g <1-----[48010:48159]-1>  cactacactgaacgctttctgg 
                     a                          cgtgacgtggagtatctgaggg 


SPP00000652_2.0   86 PGXFLCRE                       EASELSSLKPQLDELGVP 
                     PGXFLCRE                       EA+ELSSLKPQLDELGVP 
                     PGXFLCRE                       EAAELSSLKPQLDELGVP 
OMLM01009762.1:48228 cgttttagGTAATAT  Intron 2   CAGggggcttcacccggcggc 
                     cggttgga<0-----[48252:48539]-0>accatcctacataatgtc 
                     taatgcag                       gtaggctgacggtgcgct 


SPP00000652_2.0  112 LYAVVKENVGTEIQDFRPHFAGEIFLDEK                     
                     LYAVVKE+VGTE+Q+FRP F GEIFLDEK                     
                     LYAVVKEDVGTEVQNFRPFFKGEIFLDEK                     
OMLM01009762.1:48594 ctgggaggggaggcatacttaggattggaGTGAACA  Intron 3    
                     tacttaaatgcataatgcttagatttaaa<0-----[48681:48897] 
                     gttggggcctcgcgccaaccgggtcgtag                     


SPP00000652_2.0  141    QAFYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFILGG 
                        + FYGP++RKMG L F+R+GVW N +RA+R G+ GN++GEGF+LGG 
                        RRFYGPRERKMGVLAFLRVGVWMNGLRAFRKGFMGNVSGEGFVLGG 
OMLM01009762.1:48895 CAGacttgccgcaaggcgtccgggtaagcagtaagtagagtgggtgcgg 
                     -0>ggtagcgagatgttcttgtgtgtagtgctgagttgatcgagtttgg 
                        atttgctggggtcgactttggggtccgctggccgacggagctcgtg 


SPP00000652_2.0  187 VFVMGSGGQ                       GVLLEHREKEFGDKVSL 
                     VFV+G G Q                       G+LLEHRE EFGDKV++ 
                     VFVIGRGEQ                       GILLEHREIEFGDKVNI 
OMLM01009762.1:49036 gtgagcggcGTAAGCT  Intron 4   CAGgaccgcagagtggagaa 
                     ttttgggaa<0-----[49063:49142]-0>gtttaagatatgaatat 
                     gtctaaagg                       aatggcagtatgtacct 


SPP00000652_2.0  213 ESVLEAAKKV                                        
                     + V++AA+++                                        
                     KDVIQAARRI                                        
OMLM01009762.1:49194 aggacggaaa                                        
                     aattaccggt                                        
                     gtccatcaaa                                        


//
Making a D in phase 1 intron
>OMLM01009762.1:subseq(0,99223).pep
LAMGLLTSAVATVGGIVTSFMNLFTNIFLTSPLKATLTHLEETELKTLSGDTKTVKAKSL
WEKSGAVVMAVRRPGXFLCREEAAELSSLKPQLDELGVPLYAVVKEDVGTEVQNFRPFFK
GEIFLDEKRRFYGPRERKMGVLAFLRVGVWMNGLRAFRKGFMGNVSGEGFVLGGVFVIGR
GEQGILLEHREIEFGDKVNIKDVIQAARRI
//
>OMLM01009762.1:subseq(0,99223).[47859:49223].sp
CTTGCGATGGGTCTCCTCACCAGCGCCGTGGCCACTGTGGGTGGCATCGTCACTAGTTTT
ATGAACTTATTCACTAATATCTTCTTGACATCGCCGCTGAAGGCTACTCTCACACATTTG
GAGGAGACTGAGCTCAAAACGTTGTCAGGAGATACCAAGACTGTGAAAGCCAAGTCTTTG
TGGGAAAAGTCTGGAGCTGTCGTTATGGCAGTGCGGCGGCCTGGATGATTTTTGTGCAGA
GAGGAGGCTGCAGAGCTGTCCTCTCTGAAACCCCAGCTGGATGAGCTCGGGGTCCCTCTG
TATGCTGTGGTGAAGGAGGACGTCGGTACCGAGGTCCAGAACTTCAGACCATTCTTCAAG
GGGGAGATTTTCTTGGATGAAAAGAGACGTTTTTATGGGCCCCGTGAGCGGAAGATGGGT
GTCCTGGCATTCCTTCGTGTTGGGGTGTGGATGAATGGCCTCAGGGCCTTTAGGAAGGGC
TTCATGGGAAACGTGTCGGGAGAGGGCTTTGTCCTGGGTGGGGTGTTTGTCATTGGACGA
GGAGAGCAGGGAATACTTCTGGAGCACAGAGAGATTGAATTTGGGGATAAAGTCAACATT
AAGGATGTCATCCAAGCTGCCAGAAGAATA
//
OMLM01009762.1:subseq(0,99223)	GeneWise	match	47859	49223	232.12	+	.	OMLM01009762.1:subseq(0,99223)-genewise-prediction-1
OMLM01009762.1:subseq(0,99223)	GeneWise	cds	47859	48009	0.00	+	0	OMLM01009762.1:subseq(0,99223)-genewise-prediction-1
OMLM01009762.1:subseq(0,99223)	GeneWise	intron	48010	48159	0.00	+	.	OMLM01009762.1:subseq(0,99223)-genewise-prediction-1
OMLM01009762.1:subseq(0,99223)	GeneWise	cds	48160	48251	0.00	+	2	OMLM01009762.1:subseq(0,99223)-genewise-prediction-1
OMLM01009762.1:subseq(0,99223)	GeneWise	intron	48252	48539	0.00	+	.	OMLM01009762.1:subseq(0,99223)-genewise-prediction-1
OMLM01009762.1:subseq(0,99223)	GeneWise	cds	48540	48680	0.00	+	0	OMLM01009762.1:subseq(0,99223)-genewise-prediction-1
OMLM01009762.1:subseq(0,99223)	GeneWise	intron	48681	48897	0.00	+	.	OMLM01009762.1:subseq(0,99223)-genewise-prediction-1
OMLM01009762.1:subseq(0,99223)	GeneWise	cds	48898	49062	0.00	+	0	OMLM01009762.1:subseq(0,99223)-genewise-prediction-1
OMLM01009762.1:subseq(0,99223)	GeneWise	intron	49063	49142	0.00	+	.	OMLM01009762.1:subseq(0,99223)-genewise-prediction-1
OMLM01009762.1:subseq(0,99223)	GeneWise	cds	49143	49223	0.00	+	0	OMLM01009762.1:subseq(0,99223)-genewise-prediction-1
//